Top 20 Shopify Accounting Apps 2025

Report Pundit is a comprehensive reporting tool tailored for Shopify store owners, allowing the creation of unlimited custom reports and leveraging prebuilt examples. It seamlessly integrates with multiple data sources, enabling users to generate detailed analyses across sales, tax, inventory, fulfillment, and more.

• Free Report Service: Custom reports are created for you without extra charge, allowing users to focus on data analysis rather than report-building.
• Export Options: Reports can be exported in Excel, CSV, or PDF formats, facilitating easy sharing and record-keeping.
• Automated Reports: Schedule reports to generate automatically, saving time and ensuring regular data updates.
• Data Integration: Links with over 30 apps across payment, shipping, and marketing sectors, providing a holistic view of business operations.
• Multi-Store Support: Unified reporting for multiple Shopify stores, easing data consolidation and management.

The app's standout advantage, as highlighted by users, is its extraordinary customer service, providing prompt and efficient assistance in creating and customizing reports. This ensures that even users with little experience can produce complex, tailored reports with ease. Additionally, its user-friendly interface and comprehensive feature set make it an indispensable tool for data-driven decision-making in Shopify stores. The reliability and responsiveness of the support team further amplify its value, ensuring a superior experience for all users.

Data Export IO: Reports is a powerful tool designed for Shopify store owners to automate reporting processes effectively. It offers a wide array of pre-made reports covering various essential aspects such as Sales, Taxes, Inventory, and more. With advanced customization and scheduling options, store owners can easily export data in multiple formats and organize it according to their needs. The app includes access to free expert assistance for seamless integration and troubleshooting.

• Pre-made Reports: Access a diverse range of reports for Sales, Products, Payouts, POS, and more, significantly reducing the time to gather insights.
• Advanced Filters: Add multiple conditions to precisely tailor reports to your needs, making data extraction more efficient.
• Column Management: Customize reports by freezing, filtering, renaming, sorting, cloning, and hiding fields to meet specific business needs.
• Export Friendly: Generate reports in user-friendly formats such as CSV, Excel, and PDF to streamline data handling and sharing.
• Password Protected: Enhance security by adding password protection to restrict access to sensitive data within reports.

The outstanding advantages of the Data Export IO: Reports app, based on user reviews, include its comprehensive data export capabilities and exceptional customer support. Users appreciate the app's flexibility and customization options, allowing them to tailor reports to their specific requirements. Automated scheduling and integration with platforms like Google Drive save significant time, improving operational efficiency. Customer support consistently receives high praise for being responsive, knowledgeable, and dedicated to promptly resolving issues.

Better Reports is a powerful tool for analyzing sales, payments, inventory, customers, payouts, and more. It offers numerous pre-built reports, the ability to create custom reports, and features like POS support, Google Sheets integration, multi-store reporting, and multi-currency handling. You can export or schedule reports to be emailed automatically.

• Customizable Reports: Create tailored reports using custom fields, metrics, and formulas to suit your specific business needs.
• Pre-built Reports: Access a variety of ready-to-use reports for quick insights without starting from scratch.
• Google Sheets Integration: Seamlessly connect with Google Sheets for easy data manipulation and sharing.
• Automated Reporting: Schedule reports to be sent automatically via email or to Google Sheets.
• Multi-store & Multi-currency Support: Manage reports for multiple stores and currencies with ease.

Based on customer reviews, Better Reports stands out for its exceptional customer service, with rapid and personalized responses from the support team. The app's ease of use and ability to replace costly reporting tools make it a valuable addition to any Shopify store. Users appreciate the ability to create customized reports swiftly, efficiently, and with detailed guidance from the responsive support team, often highlighted by name in reviews, further attesting to the personalized assistance provided.

Synder is an essential app for Shopify merchants that automates syncing of sales, fees, taxes, and more with popular accounting platforms like Xero, Sage Intacct, and QuickBooks. It offers seamless reconciliation, multi-currency, and inventory syncing, significantly simplifying bookkeeping processes.

• Auto-sync: Automatically synchronizes Shopify sales, fees, inventory, and taxes with QuickBooks, Intacct, or Xero, ensuring accuracy and reducing manual entry.
• Flexible sync modes: Provides options to sync daily summarized entries or each transaction individually, allowing for tailored bookkeeping.
• Historical imports: Facilitates importing years of historical transactions with duplicates protection, ensuring comprehensive financial records.
• Multi-channel support: Automates sales across 25+ platforms, making it a versatile tool for multi-channel sellers.
• Quick setup: Connects all sales channels in under 15 minutes, minimizing onboarding time and maximizing efficiency.

The app's outstanding advantages include excellent customer support and substantial time-savings in bookkeeping, as evidenced by user reviews praising its efficiency and support team's responsiveness.

TrueProfit: Profit Analytics is a powerful platform that provides real-time insights into your store’s true net profit on autopilot, eliminating the need for error-prone spreadsheets. It serves as a comprehensive solution for tracking order metrics and unlocking valuable analytics for informed decision-making.

• Net Profit Tracker: Provides a real-time profit dashboard to easily monitor your financial health.
• Auto-Track Costs: Automatically tracks various costs like COGS, shipping, taxes, and more.
• Real-Time Ad Spend Sync: Syncs ad spend data from platforms such as Facebook, Google, and TikTok.
• Product and Marketing Analytics: Offers detailed product-level and ad-level net profit analysis.
• Comprehensive Reporting: Features include Customer Lifetime Value, P&L reports, and an all-store view.

TrueProfit stands out with exceptional user experiences as highlighted by its reviews. Users commend its user-friendly interface, which significantly enhances sales tracking and operational efficiency. Outstanding customer support, frequently recognized for its swift and dedicated assistance, especially when interacting with team members like Grace and Vani, contributes enormously to customer satisfaction. Users highly recommend TrueProfit for businesses needing robust profit analytics and unparalleled customer service.

QuickBooks Sync by Webgility is an advanced ecommerce accounting and inventory automation tool for QuickBooks Online. It allows seamless integration of your Shopify store, various online marketplaces, and over 50 other business applications with QuickBooks. The application automates the transfer of orders, inventory, and payout data to QuickBooks in real-time, enabling users to reconcile transactions quickly, eliminate manual data entry errors, and adapt to different sales channels effortlessly.

• Real-Time Accounting Automation: Instantly downloads and posts orders to QuickBooks, reducing manual bookkeeping efforts.
• Seamless Shopify Reconciliation: Accurately matches bank deposits and payouts for efficient financial management.
• Multichannel Inventory Sync: Updates product availability across all sales channels with each transaction.
• Comprehensive Analytics: Provides insightful sales performance and trend analysis across multiple platforms.
• 24/7 Operation: Ensures continuous data handling to meet the fast pace of your business operations.

Users have praised the app for its exceptional capability to handle store orders effortlessly, drastically reducing administrative burdens. The robust automation process minimizes manual data entry errors and saves significant time. The app's user-friendly interface, coupled with excellent customer support, makes the integration and onboarding process smooth. Customers appreciate the openness to feedback and the app's adaptability to change, aiding in enhanced efficiency and streamlined operations.

A2X Sync for QuickBooks & Xero is a powerful app designed to streamline the reconciliation of Shopify payout data with QuickBooks Online, Xero, Sage, or NetSuite. It categorizes every Shopify transaction into accurate summaries, saving time and improving financial accuracy for merchants, accountants, and bookkeepers.

• Accurate Categorization: Automatically categorizes Shopify transactions such as sales, fees, taxes, and refunds into summaries that reconcile perfectly with accounting software.
• Tax Tracking: Assigns tax rules to each Shopify transaction type, helping avoid overpayment and ensuring accurate tax tracking.
• COGS Alignment: Matches cost of goods sold with Shopify sales to maintain precise financial records.
• Professional Support: Access to a directory of accounting professionals specializing in Shopify for expert guidance.
• Multi-channel Automation: Automates e-commerce accounting across multiple sales channels including POS systems.

Based on user reviews, A2X Sync offers outstanding advantages in terms of exceptional customer support and effortless integration. Users praise the app for simplifying complex reconciliations, saving significant time, and providing detailed transaction insights. The support team consistently receives accolades for being responsive, professional, and helpful in resolving issues, leading to enhanced customer satisfaction.

The lexoffice Integration app streamlines your accounting by automating the creation of invoices and credit notes, while seamlessly synchronizing payment data and updating financial records. It simplifies tax management, enhances invoicing processes, and supports various payment platforms.

• Automatic Invoice Creation: Instantly generates invoices and credit notes for every order, minimizing manual effort and errors.
• Email Delivery: Automatically sends invoices directly to customers via email, improving communication and efficiency.
• Payment Synchronization: Integrates with multiple payment platforms like Paypal, Klarna, and Apple Pay, ensuring accurate financial tracking.
• Tax Compliance: Automates booking of OSS-relevant documents, facilitating compliance with tax reforms.
• Customizable Invoice Layouts: Provides a layout designer for tailoring invoice aesthetics to meet brand standards.

Customers consistently praise the lexoffice Integration app for its efficiency in handling complex invoicing tasks and for significantly reducing administrative burdens. The app is noted for its robust synchronization capabilities, ensuring seamless integration with various payment methods, and for its reliable adaptability to tax requirements. Users appreciate its user-friendly interface that streamlines accounting processes, making it an essential tool for businesses seeking to enhance financial management.

lexoffice 2025 is a versatile app designed to streamline all bookkeeping and accounting tasks with automation features, allowing businesses to manage orders, create invoices, synchronize payment data, and handle VAT efficiently.

• Automatic Invoice Creation: Automatically generate and book invoices, refunds, and credit notes for orders, saving time and effort.
• Email Invoice Distribution: Seamlessly sends invoices to customers via email, ensuring timely delivery and reducing administrative tasks.
• Payment Synchronization: Syncs payment data from various platforms like Paypal, Klarna, and Shopify, linking transactions with invoices automatically.
• Import Past Orders: Allows the import of invoices from older orders, facilitating streamlined and coherent accounting processes.
• GoBD Compliance: Assures automatic compliance with record-keeping obligations, easing the burden of regulatory adherence from invoicing to document retention.

Outstanding reviews of lexoffice 2025 highlight exceptional customer support and ease of use as the app's standout advantages. Users appreciate the quick and friendly customer service, which is responsive and helpful in resolving queries efficiently. The app's integration abilities, notably with Shopify, are praised for easing operations and saving time and resources, boosting overall productivity and satisfaction.

Accountingexport Pro > DATEV is a powerful app designed to streamline Shopify accounting by preparing transaction data for export in just 10 minutes. This tool efficiently consolidates sales data, including refunds, discounts, and shipping fees, and offers seamless integration with payment providers, reducing manual effort and minimizing errors for your accounting department.

• Quick Setup: Prepare Shopify accounting data in just 10 minutes, ensuring fast and efficient financial management.
• Comprehensive Exports: Access detailed sales data, including refunds, discounts, and shipping fees, all neatly packaged for accounting needs.
• Seamless Integrations: Add additional integrations with payment providers via the platform, enhancing the flexibility and capability of your accounting system.
• Error Reduction: Minimize manual work and eliminate potential sources of errors, ensuring a more reliable accounting process.
• DATEV Format Support: Export all your accounting data in the widely-used DATEV format for easier reconciliation and financial reporting.

Users have praised Accountingexport Pro > DATEV for its intuitive interface and time-saving capabilities. Many reviews highlight excellent customer support and smooth integration with Shopify, which significantly boosts productivity and accuracy in accounting workflows.

Webgility QB Desktop Sync is an ecommerce accounting solution designed to automate inventory, purchase orders, and dropshipping tasks for QuickBooks Desktop users. This app seamlessly connects over 50 business apps, including Shopify and online marketplaces, to QuickBooks, automating the transfer of orders, inventory, taxes, fees, and shipping data in real-time, thereby reducing manual errors and facilitating easy channel expansion.

• Accounting Automation: Automatically syncs orders, inventory, and financial data to QuickBooks, reducing manual data entry and errors.
• Multichannel Inventory Sync: Updates product listings across all connected stores, ensuring consistent information with each sale.
• Purchase Order & Shipping Automation: Automatically generates purchase orders and shipping labels to streamline operations.
• Seamless App Integration: Connects Shopify and over 50 other business apps to QuickBooks for all-encompassing data synchronization.
• Real-Time Transaction Posting: Maintains accurate accounting by posting transaction events as individual line items in real-time.

Webgility QB Desktop Sync's outstanding advantages include its exceptional customer support, with reviews highlighting the helpfulness and patience of the team during setup and troubleshooting. Users appreciate the comprehensive onboarding process and the ease of syncing Shopify with QuickBooks through this solution. Many customers emphasize how the app enhances workflow by saving time and eliminating errors, making it an invaluable tool for ecommerce businesses.

The sevDesk 2024 app is designed to streamline business operations by automating invoicing processes and financial management tasks, reducing manual workload with intelligent features and seamless integrations.

• Order Synchronization: Effortlessly sync order data to ensure your records are always up to date without extra manual input.
• Invoice Automation: Automatically create and send invoices, credit notes, and refunds, saving valuable time.
• Multi-Account Management: Efficiently handle multiple accounts and shops, ensuring smooth operations across different platforms.
• Dynamic Text Replacement: Customize invoices and refunds with dynamic text to cater to specific client needs effortlessly.
• DATEV Export: Easily export receipts for DATEV, simplifying your accounting and bookkeeping processes.

According to user reviews, sevDesk 2024 is praised for its ease of use and seamless integration with existing workflows. Users highlight the app's significant time savings and effective automated invoice management, making it an indispensable tool for businesses looking to streamline their accounting processes.

Profitario ‑ Profit Analytics is an app designed to streamline the process of reporting net profit, margins, disputes, and customer lifetime value by automatically importing data from various platforms like Shopify, AliExpress, Facebook Ads, and PayPal.

• Seamless Integrations: Automatically imports data from platforms like Shopify, AliExpress, Facebook Ads, and PayPal.
• Comprehensive Reporting: Generates detailed reports on net profit, margins, expenses, and lifetime value of customers.
• Time Efficiency: Reduces the time spent on manual calculations, allowing users to understand their financial status quickly.
• User-Friendly Interface: Provides an easy-to-use interface for monitoring essential business metrics in real-time.
• Free Trial: Offers a 14-day free trial for stores of all sizes, allowing users to experience the app risk-free.

Profitario has been praised for its transformative effect on managing Shopify stores, providing comprehensive and real-time insights into business metrics. Users find it particularly valuable for its ability to simplify profit tracking and decision-making, with a simple interface and effective reporting features that reflect a deep understanding of a store's financial health. - User Rating: 5/5

QuickBooks Bridge is an app that seamlessly syncs sales data to QuickBooks Online, offering flexible options for individual order or summary sync, making data management easy and efficient.

• Individual Order Sync: Export orders, products, and customer data automatically to QuickBooks, ensuring comprehensive records with every transaction.
• Summary Invoice Sync: Conveniently create one entry per day for each payment method, simplifying reconciliation processes with daily summaries.
• Automated Sync Process: Enjoy an efficient syncing experience with options for automatic or manual syncing at your convenience.
• Easy Reconciliation: Streamline financial management with user-friendly reconciliation options within the app.
• Comprehensive Tax Support: Includes built-in tax options, like HST, GST, and PST for Canada, providing flexibility for different regional requirements.

This app has received outstanding reviews for its immediate and clean syncing capabilities without data loss, excellent customization options for detailed data import, and superior efficiency compared to native options. Users commend the exceptional customer support team, noting their expertise, responsiveness, and professionalism, which have significantly simplified their workflows. QuickBooks Bridge offers high ease of use, especially across multiple stores, ensuring a top-tier integration experience.

Xero Bridge by Parex is a powerful app designed to effortlessly sync sales data to Xero, utilizing both Individual Order and Summary Sync options. This app allows for the automatic or manual export of orders, products, and customer data, catering to various syncing preferences and ensuring straightforward reconciliation.

• Individual Order Sync: Seamlessly export all orders, products, and customer details to Xero, ensuring comprehensive data transfer.
• Summary Invoice Sync: Automatically create consolidated invoices based on payment methods for efficient reconciliation.
• Automated Sync Process: Sync data throughout the day to keep your financial records consistently up-to-date.
• Easy Reconciliation: Facilitate straightforward financial reconciliation, simplifying accounting processes.

The app's outstanding advantages, as highlighted in reviews, include exceptional customer support that is quick, clear, and solution-oriented, effortlessly customizable integrations for specific business needs, and significant time savings in data entry, making it a valuable tool for businesses looking to streamline their accounting processes with Xero.

Profit Calc: Profit Calculator streamlines financial understanding by providing instant profit calculations and insights, eliminating the need for spreadsheets. It offers real-time reports and seamless integration with essential ad platforms, designed for stores using VAT or COD. The app allows viewing multiple store reports together or separately with ease.

• Real-Time Reporting: Get real-time reports and breakdowns by orders, products, or overall store performance.
• Ad Platform Synchronization: Syncs effortlessly with Facebook, Google, Bing, TikTok, Snapchat, and Pinterest ads.
• Integration Flexibility: Supports integration with Aliexpress, Printful, Printify, CJ Dropshipping, and cost per item features.
• VAT and COD Compatibility: Configured specifically to accommodate stores using Value Added Tax and Cash on Delivery.
• Multi-Store Reporting: View multiple stores' performance together or separately within one comprehensive report.

The app's outstanding advantages, as highlighted by users, include smooth setup and integration, precise and affordable cost analysis, and exceptional customer support. Reviewers particularly appreciate Jamie’s personal assistance in problem-solving and customization of each user’s dashboard, enhancing overall user experience and satisfaction.

Sidr ‑ Sales Tax Automation is an innovative app designed to streamline the complex process of sales tax calculation and compliance. It offers seamless integration with your existing systems, ensuring accuracy and efficiency in managing sales tax obligations.

• Integration: Easily integrates with existing e-commerce platforms to collect and calculate sales tax automatically.
• Compliance: Ensures that your business adheres to the latest tax requirements, minimizing legal risks.
• Accuracy: Provides precise calculations to prevent overpayment or underpayment of sales taxes.
• Reporting: Generates comprehensive reports to simplify tax filing and provide insights into your business's tax situation.
• User-friendly Interface: Offers an intuitive interface that requires minimal training for users to get started.

The app's outstanding advantages are cited by users in its reviews. Many customers praise its seamless integration and accurate tax calculations, which save time and reduce the chances of errors. The app's robust compliance features ensure that businesses stay up-to-date with current regulations, while its user-friendly interface makes it accessible for businesses of all sizes.

Merchbees Inventory Value is an efficient app that provides real-time stock value and inventory quantity across all products. It allows you to view up-to-date reports instantly, with capabilities to create unlimited presets, and generate historical inventory reports for comprehensive accounting needs.

• Real-Time Reporting: Instantly access the most current inventory information without any delays.
• Customizable Presets: Create and manage unlimited report presets tailored to specific locations, collections, or products.
• Detailed Reports: Access both collection-based and product-specific inventory reports effortlessly.
• Historical Snapshots: Conduct weekly or monthly snapshots to compile detailed historical inventory data for accounting purposes.
• Data Export: Export comprehensive inventory data including quantity and value per variant to formats like Excel and PDF.

The app's outstanding advantages, as praised by users, include its ease of use and time-saving capabilities. Users appreciate the accurate and prompt updates on inventory values, the ability to customize reports extensively, and its immense utility in bookkeeping and financial tracking, all contributing to a highly efficient inventory management experience.

The QUICKBOOKS SYNC by BOLD app is a reliable tool for Shopify stores and accounting teams to synchronize Shopify transactions with QuickBooks. It simplifies financial reporting, payment management, and inventory tracking, ensuring easy management of sales data and customer information.

• Automatic Order and Refund Import: Seamlessly import orders and refunds from Shopify to QuickBooks to maintain accurate financial records.
• Product and Inventory Sync: Automatically sync products and inventory from QuickBooks to Shopify, keeping both platforms consistently updated.
• Payout and Adjustment Export: Export payout fees and adjustments from Shopify Payments to QuickBooks to track financial transactions effectively.
• Data Control: Own and manage your data by utilizing on-demand export or automatic synchronization to QuickBooks.
• Comprehensive Support: Access a dedicated QuickBooks support team and extensive help center documentation for seamless assistance and troubleshooting.

Based on user reviews and ratings, the app's outstanding advantages include its user-friendly interface, reliable data synchronization, and responsive customer support. Users appreciate its ability to reduce manual work through automation, which enhances efficiency and accuracy in managing Shopify and QuickBooks data. The app is consistently praised for its seamless integration, saving time and minimizing errors, as well as for its knowledgeable support team, who are readily available to assist with any issues.

QuickBooks Online is designed to streamline your accounting processes by facilitating the integration between your Shopify store and QuickBooks. It effortlessly tracks payouts by breaking them into sales receipts, refund receipts, and expenses while pulling historical data for comprehensive insights.

• Simple Integration: Connect your Shopify account with QuickBooks in just a few easy steps for seamless importing of payouts.
• Automated Categorization: Automatically sorts payouts into sales, refunds, and fees, saving time on data entry and ensuring accuracy.
• Comprehensive Reporting: Provides summarized sales, refund, and expense transactions which are easily viewable on your financial statements.
• Cash Flow Insights: Helps you stay on top of your cash flow by better understanding your revenue channels and financial distribution.
• Historical Data Access: Load up to 24 months of historical data from Shopify Payouts for better financial analysis and planning.

Users have praised QuickBooks Online for significantly reducing the time spent on manual bookkeeping tasks, enjoying its simplicity in integrating with Shopify, and appreciating its accurate transaction categorization. The app's ability to present clear cash flow insights and streamlined summary reports ensures users have a much clearer visibility of their business finances.