Shopify Quickbooks integration apps 2025

Connex for QuickBooks

$359 / Month

9.1

25 Reviews

Sync payouts, inventory and orders with QuickBooks Show more

Connex for QuickBooks is a seamless integration tool designed to ensure the accuracy of your financial data by syncing your orders correctly. By automating the synchronization process, it eliminates manual data entry errors and ensures the financial information in QuickBooks is precise and up-to-date. The app's rules engine simplifies the mapping of fields, reducing the time and effort typically associated with manual data management. With automated payout matching, all sales and refunds are accurately synced, providing users with a clear and consistent financial picture. The product mapping tool allows users to map multiple products to a single item, streamlining inventory management. Overall, Connex for QuickBooks offers peace of mind by ensuring that your financial operations are efficient and error-free, enhancing productivity and accuracy for businesses.

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Sync inventory

Automate data entry

Sync orders

Product mapping

Eliminate errors

Sync payouts

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QuickBooks/Xero sync ‑ Synder

$65-$275 / Month

9.1

271 Reviews

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Sync your Sales, Fees and Inventory to QuickBooks or Xero Show more

Synder is a powerful app designed to automate the synchronization of Shopify sales data, including items, fees, taxes, discounts, gift cards, and shipping details, with accounting platforms like Xero, Sage Intacct, and QuickBooks Online or Desktop. It streamlines reconciliation processes, supports historical data imports, and facilitates multi-currency transactions, offering a comprehensive bookkeeping solution. Users can connect all their sales channels with Synder in under 15 minutes, making it a time-efficient choice for busy Shopify merchants and accountants. The app allows for flexible syncing options, enabling daily summarized entries or individual sales to be recorded based on user preferences. With robust functionality that supports over 25 platforms, Synder ensures seamless integration, helping businesses maintain accurate financial records with minimal effort. Trusted by professionals, it simplifies the often complex accounting process, making it an ideal tool for managing Shopify store finances efficiently.

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Multi-currency support

Auto-sync shopify

Daily summarized entries

Import historical transactions

Inventory/cogs sync

Supports 25+ platforms

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PayTraQer

$19.9-$49 / Month

7.5

6 Reviews

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Automatically Sync eCommerce data with QuickBooks. Show more

PayTraQer is a versatile financial management application designed to seamlessly integrate with popular accounting software, streamlining the tracking and reconciliation of online payments. This app is particularly beneficial for small to medium-sized businesses looking to automate their payment processing by syncing various payment gateways like PayPal, Stripe, and Square with accounting platforms like QuickBooks and Xero. PayTraQer offers robust features such as automatic transaction import, real-time data updates, and detailed reporting, helping businesses maintain accurate and up-to-date financial records with minimal manual intervention. Users can expect enhanced efficiency in their financial operations, reducing errors often associated with manual entry and complex reconciliations. Additionally, PayTraQer provides a user-friendly interface that simplifies the setup process and ongoing management for users, even those without extensive accounting knowledge. Ensure compliance and accuracy in financial reporting with PayTraQer, a reliable solution to modern payment processing challenges.

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Sales recording

Inventory updates

Fee management

Order syncing

Deposit tracking

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SyncTools

$19-$59 / Month

7.3

1 Reviews

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QuickBooks Sync Show more

QuickBooks Sync By SyncTools is a robust application designed to streamline financial management for Shopify merchants through effortless integration with QuickBooks. By automating the synchronization of transactions, this app minimizes manual entry errors and ensures accurate, up-to-date financial reporting. Merchants have the flexibility to choose between summarized reports or detailed individual records, catering to their specific business needs. SyncTools also offers functionality to map Shopify transactions directly to QuickBooks accounts and taxes, enhancing precision in financial reporting. The app further aids in automatically posting Shopify payouts to QuickBooks, maintaining current financial records without extra hassle. With dedicated support for setup and troubleshooting, SyncTools ensures a smooth experience, allowing merchants to focus on growing their business efficiently.

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Automated sync

Error minimization

Precise reporting

Payout posting

Transaction mapping

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WeIntegrate: QuickBooks Sync

$19-$89 / Month

8.2

23 Reviews

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Automated, instant & accurate accounting in QuickBooks Online Show more

WeIntegrate: QuickBooks Sync is a seamless integration tool designed to streamline your business's financial management processes. This app effortlessly syncs data between your existing platforms and QuickBooks, ensuring that your financial records are always accurate and up-to-date. With WeIntegrate, users can automate routine bookkeeping tasks, reduce manual data entry, and eliminate the risk of human error. This enhances productivity and allows business owners and accountants to focus more on business growth and strategic planning. The app is user-friendly, with a simple setup process and intuitive interface, making it accessible even for those with minimal technical expertise. Additionally, WeIntegrate offers robust customer support and regular updates, ensuring that the software evolves alongside your business needs. Perfect for small to medium-sized businesses, it brings efficiency and transparency to your financial operations.

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Inventory sync

Instant updates

Automated process

Fulfillment sync

Sales sync

Refund sync

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Doss

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Manage your operations in one platform, from PO to POS Show more

Doss is an innovative app designed to be your team's go-to source for comprehensive insights about your business operations, both internally and externally. It features an Adaptive Resource Platform (ARP), a versatile ERP-alternative that simplifies the creation of custom workflows with a user-friendly interface akin to drawing flowcharts. This ensures that you harness the capabilities of a professionally configured ERP system without navigating cumbersome system integrator processes. Doss offers straightforward, self-service onboarding and integrates seamlessly with third-party platforms by merely logging in or uploading a CSV file. Users can easily configure tables, charts, and dashboards according to their needs and preferences, while the app offers automatic data synchronization with major services like Shopify, Quickbooks, and Salesforce. Additionally, Doss allows users to save and share customized views of their data with precise access control, enhancing collaboration and data security within your team.

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3rd-party integrations

Custom workflows

Configurable tables

Sync 3rd-party data

Save and share views

Fine-grain access control

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BOLD QuickBooks Sync

$19.99-$59.99 / Month

(3.3/5)

265 Reviews

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Accurate and EASY way to connect & auto-sync with QUICKBOOKS! Show more

QUICKBOOKS SYNC by BOLD is a powerful integration tool trusted by established Shopify stores and accounting teams to seamlessly connect Shopify and QuickBooks. It simplifies essential business processes, including financial reporting, payment management, and inventory tracking, enabling smoother operations and more accurate analysis. With its ability to effortlessly sync line items, sales, taxes, shipping, gift cards, and refunds, this app ensures comprehensive data management while also importing and managing customer information. QUICKBOOKS SYNC supports both automatic synchronization and on-demand historical data retrieval, offering flexibility and control over your financial data. The app is backed by years of experience and is designed to support stores of all sizes across the US and Canada. Additionally, users benefit from a robust support system, including a dedicated QuickBooks support team and extensive help center documentation, ensuring a seamless integration experience.

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Auto-sync orders

Inventory tracking

Sync products

Manage customers

Data export

Import refunds

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QuickBooks Sync by CRM Perks

$19-$39 / Month

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Quickly integrate Orders and Customers with QuickBooks Show more

QuickBooks Sync by CRM Perks is an efficient solution for seamlessly integrating your Shopify store with QuickBooks Online. The app automates the transfer of Shopify customers and orders to QuickBooks, enabling you to effortlessly create various financial documents such as invoices, sales receipts, estimates, payments, credit memos, and refund receipts. You can choose to sync data automatically or manually, making it easy to incorporate historical Shopify data into QuickBooks. The app facilitates the creation and updating of customer records in QuickBooks and instantly processes invoices or sales receipts. Additionally, it logs all data transfers for easy tracking and provides notifications of any synchronization errors, ensuring smooth and accurate financial management.

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Real-time sync

Error notifications

Historical data transfer

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Inventory Wave

$49-$699 / Month

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Streamline inventory and optimize your business operations Show more

Inventory Wave is a comprehensive inventory management platform tailored for small and medium-sized businesses. It effortlessly integrates with QuickBooks Online, ensuring your financials are always up-to-date by automatically syncing inventory, sales, and purchase orders. This app transforms accounting into a seamless process. Additionally, Inventory Wave includes an in-app shipping solution that connects you with major carriers like FedEx and UPS, empowering you to generate shipping labels and track shipments with ease. The platform supports smart inventory management techniques, offering features like FIFO, lot tracking, barcoding, and maintaining complete historical data. Seamless integration with popular platforms such as Shopify, Amazon, and WooCommerce further amplifies its utility. In essence, Inventory Wave offers a centralized solution for inventory and logistics management, enhancing operational efficiency and accuracy for your business.

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Seamless integration

Smart inventory management

In-app shipping

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Optimus Sync

Backup your POS Orders and Customers to QuickBooks online. Show more

Optimus Sync is a powerful tool designed to streamline your bookkeeping by synchronizing Order and Customer records seamlessly to QuickBooks Online. It offers advanced features for generating automated invoices, optimizing your financial management processes. The app allows for effortless importation of records from CSV files and provides the flexibility to export existing data for viewing in Excel. Users can view orders and customers in a user-friendly format and access insightful sales trend reports. Additionally, Optimus Sync supports easy importation of customer records into Shopify, enhancing your e-commerce capabilities. With the convenience of scheduling daily cycles, automatic synchronization with QuickBooks becomes a hassle-free routine, ensuring your financial data is always up-to-date.

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Order synchronization

Csv import/export

Automated invoicing

Customer synchronization

Scheduled syncs

Sales trend reports

Credit & Charge Account On POS

$49 / Month

(2.8/5)

5 Reviews

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Charge & Manage Purchases On A Customer's Account Within POS Show more

Credit & Charge Account On POS is a powerful app designed to enhance customer service within Shopify POS by offering flexible credit and charge account options. This app allows businesses to extend credit to their customers, enabling them to put purchases on a tab and settle their accounts based on customized payment schedules like weekly, bi-weekly, monthly, or net-45. Retailers can easily monitor active balances, view remaining store credit, and access comprehensive transaction history for each customer, ensuring smooth financial management and transparency. By integrating with Quickbooks POS Desktop, and soon extending support to Quickbooks Online, the app facilitates seamless synchronization of financial data for effortless bookkeeping. With these features, businesses can improve customer loyalty and streamline their accounting processes, providing a modern, efficient retail experience. Whether it's setting store credit or viewing detailed purchase histories, Credit & Charge Account On POS simplifies financial interactions to benefit both businesses and their customers.

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Quickbooks integration

Charge purchases account

View transactions history

Set store credit

Flexible payment durations

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Syft Analytics

$19-$79 / Month

8.2

5 Reviews

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Build beautiful reports & combine with your QuickBooks data Show more

Syft Analytics is a powerful application designed to streamline your data analysis and reporting needs. It allows you to create and export professional dashboards and reports to Excel, Google Sheets, PDF, and interactive live views with ease. The app seamlessly integrates Shopify and QuickBooks data, along with information from other sources, to provide unmatched clarity and insight into your store's performance. With just a few clicks, you can analyze customer behavior, track product trends, and report on key performance metrics, all while comparing your results to industry benchmarks. Syft Analytics empowers you to visualize and understand your business like never before, offering a comprehensive view of all your locations and stores. Whether you're graphing customer data, product metrics, or overall store health scores, Syft helps you make data-driven decisions with confidence.

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Export reports

Analyze trends

Create dashboards

Combine data

Report metrics

Visualize performance

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QuickBooks Desktop Connector

$99 / Month

(3.4/5)

16 Reviews

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QuickBooks Desktop POS Migration and Integration tool Show more

QuickBooks Desktop Connector is a powerful tool designed to streamline your business operations by facilitating a smooth transition from QuickBooks Desktop POS to Shopify POS. This app ensures seamless integration for both in-person and online sales by synchronizing products, accounting, and sales data, making the switch effortless. With new B2B workflows, it offers advanced features such as customer and class synchronization, draft orders, and bi-directional payment and payment term syncing. By reducing manual tasks, the app not only saves you time but also helps maintain the accuracy of your financial records, an ideal solution for growing businesses. Key functionalities include direct migration of products, accurate syncing of essential business and accounting data, and reliable syncing of Shopify companies with QuickBooks. With this connector, you can ensure your orders are marked as paid and manage net payment terms efficiently. QuickBooks Desktop Connector is your perfect business companion, simplifying financial management and boosting productivity.

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Seamless integration

Data synchronization

Bi-directional payment

Install App

BOLD QuickBooks Sync

$19.99-$59.99 / Month

(3.3/5)

265 Reviews

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Accurate and EASY way to connect & auto-sync with QUICKBOOKS! Show more

QUICKBOOKS SYNC by BOLD is a powerful integration tool trusted by established Shopify stores and accounting teams to seamlessly connect Shopify and QuickBooks. It simplifies essential business processes, including financial reporting, payment management, and inventory tracking, enabling smoother operations and more accurate analysis. With its ability to effortlessly sync line items, sales, taxes, shipping, gift cards, and refunds, this app ensures comprehensive data management while also importing and managing customer information. QUICKBOOKS SYNC supports both automatic synchronization and on-demand historical data retrieval, offering flexibility and control over your financial data. The app is backed by years of experience and is designed to support stores of all sizes across the US and Canada. Additionally, users benefit from a robust support system, including a dedicated QuickBooks support team and extensive help center documentation, ensuring a seamless integration experience.

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Auto-sync orders

Inventory tracking

Sync products

Manage customers

Data export

Import refunds

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Ecomigrator: QuickBooks Sync

$50-$250 / Month

8.2

1 Reviews

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Effortless QuickBooks Accounting and Product Integration Show more

QuickBooks Sync by Ubiquitous is a powerful tool designed to simplify and enhance the integration of e-commerce order data with QuickBooks accounting software. This app allows users to effortlessly transfer customer details, order histories, and more without requiring technical expertise, thanks to its intuitive and user-friendly interface. QuickBooks Sync supports multiple currencies and languages, facilitating seamless global business expansion while ensuring compliance with various tax jurisdictions. The app offers real-time sales data integration, automatic importing, and advanced inventory analysis and management capabilities. Users can benefit from unattended real-time order processing and inventory synchronization, leading to streamlined workflows and heightened data accuracy. With this comprehensive solution, businesses can make informed decisions by seamlessly integrating all sales data into QuickBooks, ultimately driving efficiency and growth.

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Multi-language support

Multi-currency support

Inventory management

Real-time processing

Order integration

Accurate tracking

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QuickBooks Online Global

$30-$85 / Month

9.5

2,879 Reviews

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Sync your sales channel with QuickBooks Online (Global Only) Show more

QuickBooks Online Global is a powerful app designed to streamline the financial management of Shopify merchants operating outside the United States. It seamlessly integrates Shopify storefronts with QuickBooks Online, allowing users to easily track income, expenses, and optimize tax deductions. The app automates the transfer of critical data, such as invoices, customers, and products, reducing manual data entry and minimizing errors. QuickBooks Online Global ensures real-time synchronization of inventory and accounting data between platforms, helping merchants maintain accurate stock levels and financial records. By importing sales data from Shopify to QuickBooks Online, the app provides comprehensive oversight of financial health and business performance. This integration empowers users to manage their finances more efficiently, enabling them to focus on growing their e-commerce business with confidence.

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Inventory synchronization

Multi-storefront integration

Sales channel sync

Automated bookkeeping

Tax deduction optimization

Expense tracking

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QuickBooks Sync by MyWorks

$24-$89 / Month

9.1

38 Reviews

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Automatically Sync Sales and Inventory Data with QuickBooks Show more

QuickBooks Sync by MyWorks is a robust solution designed to streamline ecommerce accounting for Shopify users with seamless integration to QuickBooks Online. It ensures that your orders, customers, payments, inventory, and more are automatically synchronized in both platforms, promoting accurate and up-to-date data. With intuitive features like automapping and custom field mapping, the app adapts to fit your unique workflow and accounting needs. QuickBooks Sync by MyWorks offers a quick setup and a user-friendly interface, allowing you to manage the synchronization process directly from Shopify with ease. The app also supports advanced functionalities such as transaction fee management, making it a powerful tool for scaling your business efficiently. Enjoy peace of mind with its reliable, 24/7 customer support team, ready to assist you anytime.

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Quick setup

User-friendly interface

Inventory management

Custom field mapping

Transaction fee support

Two-way syncing

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QuickBooks/Xero sync ‑ Synder

$65-$275 / Month

9.1

271 Reviews

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Sync your Sales, Fees and Inventory to QuickBooks or Xero Show more

Synder is a powerful app designed to automate the synchronization of Shopify sales data, including items, fees, taxes, discounts, gift cards, and shipping details, with accounting platforms like Xero, Sage Intacct, and QuickBooks Online or Desktop. It streamlines reconciliation processes, supports historical data imports, and facilitates multi-currency transactions, offering a comprehensive bookkeeping solution. Users can connect all their sales channels with Synder in under 15 minutes, making it a time-efficient choice for busy Shopify merchants and accountants. The app allows for flexible syncing options, enabling daily summarized entries or individual sales to be recorded based on user preferences. With robust functionality that supports over 25 platforms, Synder ensures seamless integration, helping businesses maintain accurate financial records with minimal effort. Trusted by professionals, it simplifies the often complex accounting process, making it an ideal tool for managing Shopify store finances efficiently.

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Multi-currency support

Auto-sync shopify

Daily summarized entries

Import historical transactions

Inventory/cogs sync

Supports 25+ platforms

Try for Free

QuickBooks Bridge

$10-$30 / Month

9.1

194 Reviews

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Sync Individual sales OR Summary journal to QuickBooks Online Show more

QuickBooks Bridge is a seamless integration tool designed to sync sales data from Shopify to QuickBooks Online, offering both automated and manual options. With its Individual Orders feature, users can effortlessly export all their orders, products, and customer data directly to QuickBooks, ensuring that all transaction details, including taxes, are accurately recorded. Alternatively, the Summary Sync option provides a streamlined approach by creating a single entry for each Shopify payout and daily entries for other payment methods, greatly facilitating easy reconciliation. This app ensures smooth and efficient bookkeeping with its user-friendly interface and automated sync process, saving time and reducing errors. Whether you prefer detailed individual order sync or a more consolidated summary invoice sync, QuickBooks Bridge caters to various business needs with its robust capabilities. Perfect for businesses looking to simplify their accounting processes, this app ensures your financial data is always up-to-date, consistent, and ready for review.

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Individual order sync

Easy reconciliation

Summary invoice sync

Automated sync process

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QuickBooks Desktop by Parex

$40 / Month

9.1

62 Reviews

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Integrate your data with QuickBooks Desktop account with ease Show more

QuickBooks Desktop is an application designed to effortlessly integrate and synchronize sales data with QuickBooks Desktop or Enterprise editions. With its powerful Individual Orders feature, users can automatically export comprehensive details such as orders, products, and customer data into QuickBooks, streamlining accounting processes. The app provides the flexibility of automated data synchronization or manual syncing, catering to different user preferences. Furthermore, the Summary Sync functionality consolidates multiple transactions by creating a singular entry per Shopify payout and daily entries for other payment methods, simplifying financial tracking. Users benefit from an easy reconciliation process, which ensures the accuracy of financial records. QuickBooks Desktop enables businesses to maintain up-to-date and accurate financial data, significantly reducing administrative burdens. Its robust features make it an invaluable tool for businesses seeking efficient financial management.

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Automated sync

Individual order sync

Easy reconciliation

Summary invoice sync

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Shopify Quickbooks integration apps

Related Categories

Price

Based on reviews

Showing 1 to 20 of 12 Apps

Connex for QuickBooks

QuickBooks/Xero sync ‑ Synder

PayTraQer

SyncTools

WeIntegrate: QuickBooks Sync

Doss

BOLD QuickBooks Sync

QuickBooks Sync by CRM Perks

Inventory Wave

Optimus Sync

Credit & Charge Account On POS

Syft Analytics

QuickBooks Desktop Connector

BOLD QuickBooks Sync

Ecomigrator: QuickBooks Sync

QuickBooks Online Global

QuickBooks Sync by MyWorks

QuickBooks/Xero sync ‑ Synder

QuickBooks Bridge

QuickBooks Desktop by Parex