Shopify Fees apps 2025

Webgility x QuickBooks Desktop

$139-$499 / Month

9.3

388 Reviews

Simplify accounting, inventory and listings with automation Show more

Webgility QB Desktop Sync is an innovative solution designed to streamline ecommerce accounting and inventory management for QuickBooks Desktop users. This powerful app facilitates seamless integration between your Shopify store, various online marketplaces, and over 50 business applications, ensuring that all your sales data is synchronized effortlessly and in real time. By automating the transfer of orders, inventory, taxes, fees, and shipping information directly into QuickBooks, the app drastically reduces the potential for manual accounting errors. Additionally, Webgility QB Desktop Sync allows you to manage product listings and pricing across multiple platforms, ensuring consistent and accurate data management. Users can benefit from features like detailed accounting sync, which posts transaction events as individual line items, and Shopify reconciliation, which quickly aligns bank deposits with payouts. The app also supports multichannel inventory synchronization and automatically generates purchase orders and shipping labels, making it easier to adopt new sales channels with confidence.

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Real-time synchronization

Order automation

Inventory updates

Dropshipping integration

Purchase order generation

Multichannel sync

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Zonos Duty and Tax

$2500-$4000 / Month

9.1

169 Reviews

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Calculate and collect duty, tax, fees at checkout w/remittance Show more

Zonos Duty and Tax is a powerful app designed to facilitate seamless global business expansion by addressing common challenges in cross-border selling. It enhances the international shopping experience by allowing customers to pay duties, taxes, and fees upfront, ensuring cost transparency and expedited customs clearance. The app simplifies cross-border transactions with automated tax compliance, offering reliable landed cost calculations, duty and tax collection, VAT threshold monitoring, and efficient in-country tax registration and remittance for various regions, including the UK and EU. Zonos also handles duty and tax payments, eliminating the need for businesses to reconcile or dispute carrier bills. It simplifies VAT remittance, removing the burden of registration processes for systems like IOSS and UK VAT. Additionally, users can connect their own carrier accounts, allowing control over shipping rates, and benefit from significant discounts on carrier import fees with partners such as UPS, DHL, and FedEx. The app supports efficient creation of compliant cross-border labels with pre-filled customs documentation, streamlining the shipping process.

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Calculate duties upfront

Guaranteed cost calculations

Automated tax compliance

Vat threshold monitoring

In-country tax remittance

Reconciliation automation

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Taxomate QuickBooks Xero Sync

$12-$44 / Month

8.2

14 Reviews

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Automatically Sync Sales & Fees to QuickBooks or Xero Show more

Taxomate QuickBooks Xero Sync is an app designed to streamline the financial management of Shopify stores by automating the synchronization of payout transactions with QuickBooks Online or Xero. It efficiently detects Shopify-initiated payouts, processes transactions, and generates detailed summaries of revenues, expenses, and other related financial activities. Users can customize which accounts and tax rates to apply to each Shopify transaction type, or let the app handle these settings automatically. By posting summarized payout invoices directly to QuickBooks or Xero, the app simplifies the reconciliation process with bank account payments. Additionally, taxomate helps calculate the Cost of Goods Sold and Inventory Valuation, providing key insights into business performance. This seamless integration enhances efficiency, accuracy, and ease in managing online store finances.

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Automatically fetch payouts

Generate transaction summaries

Select tax rates

Summarize payout invoices

Match invoices easily

Calculate cogs

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HideShip:Hide Shipping Methods

$3.99-$7.99 / Month

9.1

64 Reviews

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Hide, sort & rename shipping methods by mixing multiple rules Show more

HideShip: Hide Shipping Methods is a versatile app designed to optimize the checkout experience for merchants by managing shipping options effectively. By allowing users to hide, sort, and rename shipping methods during checkout, HideShip reduces unnecessary shipping fees and time wastage, which can otherwise significantly impact business profits. The app offers the ability to tailor shipping choices based on multiple conditions such as product type, customer profile, geography, cart contents, and order specifics. This customization not only enhances customer satisfaction but also boosts conversion rates by presenting the most relevant shipping options. Built utilizing "Native Shopify Functions," HideShip ensures a faster, more seamless integration into Shopify stores. Additionally, the app provides robust multichannel support through in-app chat, a wealth of online resources, and active social media engagement, ensuring that users have access to assistance whenever needed.

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Hide shipping methods

Native shopify functions

Sort shipping options

Improve conversions

Customer satisfaction

Rename shipping choices

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Klavena: QuickBooks Sync

$25-$49 / Month

9.1

1 Reviews

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Automated, accurate accounting in QuickBooks Online Show more

Klavena: QuickBooks Sync is a powerful tool designed to simplify the process of reconciling Shopify payout data with QuickBooks Online (QBO). It effortlessly categorizes every Shopify transaction, including sales, fees, taxes, and refunds, into precise summaries that align perfectly with your accounting software deposits. Trusted by leading merchants, accountants, and bookkeepers, Klavena significantly reduces the time spent on bookkeeping and helps you track taxes and COGS accurately. It eliminates the hassle of manually reconciling transactions, providing a seamless financial overview of your business. The app supports multiple marketplaces, countries, and currencies, ensuring global compatibility for diverse business needs. Klavena also offers comprehensive inventory tracking across all products, helping you maintain financial accuracy and visibility in your operations. Enjoy streamlined financial management and gain true insight into your business's financial health with Klavena.

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Multi-currency support

Inventory tracking

Automated transaction categorization

Accurate summaries

Import shopify data

Track taxes & cogs

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Pfand ‑ Deposit & Cart Fee

$6.32 / Month

(3.3/5)

25 Reviews

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Create Mandatory / Opt Fees, Deposit & Surcharge + Many more. Show more

Pfand - Deposit & Cart Fee is an innovative app designed to manage and apply fees to purchases in a streamlined and customizable manner. It allows businesses to create both mandatory or optional fees, which can be either fixed or percentage-based, providing flexibility to suit different pricing strategies. The app offers the functionality to implement these fees in online stores, physical points-of-sale (POS), or both, ensuring seamless integration across various sales channels. Users can apply fees based on specific conditions such as product type, cart total, quantity, customer profile, and location. Additionally, Pfand supports returning fees to customers when items are returned, enhancing customer service. The app boasts exciting features such as working with product bundles, cash rounding, and fee application on a per-product quantity basis, offering comprehensive solutions for modern retail environments.

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Mandatory/optional fees

Fixed/percentage fees

Pos/online integration

Conditional fee application

Return fee support

Bundle fee handling

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Storebuddy

$29-$179 / Month

8.2

6 Reviews

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Automagisk bogføring af webshop-ordre, betalinger og payouts Show more

Storebuddy is an essential tool for both small and large online shops looking to automate tedious accounting tasks. It offers accurate and automated bookkeeping, ensuring you have a clear and reliable overview of your finances, which is crucial for business growth. By streamlining your accounting processes, Storebuddy lets you focus on growth-oriented activities such as increasing sales, selecting the right products, and enhancing your marketing efforts. The app provides automated bookkeeping for orders, payments, fees, gift cards, and deposits, along with automatic reconciliation reports. With a single login, you can manage all your webshops, gaining real-time insights into your orders and transactions. Storebuddy also supports various invoicing needs, including B2B, B2C, and B2G billing, with options to create EAN invoices, making it versatile and comprehensive for modern business needs.

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Order processing

Automated reporting

Automated bookkeeping

Fee management

Invoice creation

Payment tracking

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FreeAgent

(1.5/5)

8 Reviews

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Set up an integration with your existing FreeAgent account. Show more

FreeAgent is an intuitive online accounting software tailored specifically for small businesses, empowering them to gain control over their financial management. With its seamless integration with Shopify, FreeAgent simplifies bookkeeping by automatically importing sales data, complete with payments and the appropriate VAT rates. This smart application effortlessly converts returns and refunds into credit notes, ensuring accuracy and coherence in financial records. Additionally, it takes care of processing fees from Shopify and various payment providers, reducing manual entry and errors. By automating these crucial tasks, FreeAgent allows business owners to save valuable time and focus on scaling their ventures. Easily connect your Shopify store to your FreeAgent account, set your preferred start date for data import, and align tax rates to streamline your accounting processes efficiently.

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Automate bookkeeping

Import sales data

Handle vat rates

Convert returns/refunds

Daily data sync

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Airboxr: AI Sales Metrics

$49-$799 / Month

8.2

13 Reviews

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Analyze profits, LTV, ROAS, customer segments within GSheets. Show more

Profit Analytics by Airboxr is a powerful tool that streamlines the process of generating revenue reports directly within your spreadsheets. It automates the creation of spreadsheet models used by revenue leaders, connecting seamlessly with data sources such as Shopify, Amazon, and various ad channels. This integration facilitates automated generation of revenue, marketing, and financial reports, which can be delivered into spreadsheets or visualized in Looker dashboards. The app is designed to support finance, marketing, and operations teams, as well as founders and solopreneurs, by providing critical insights into their business performance. With features like automating profitability analysis and exporting orders, inventory, fees, and customer data from Shopify and Amazon, it enhances data-driven decision-making. Users can also build customer segments based on purchase history and get key metrics such as CPA, CAC, LTV, AOV, and MER on a unified dashboard. Additionally, Profit Analytics offers tools to analyze best-selling products, create product bundles, and identify seasonal trends, thus empowering businesses to optimize their strategies effectively.

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Profitability analysis

Export orders

Spreadsheet integration

Automated revenue reports

Connects data sources

Looker dashboard support

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Xero, QuickBooks or MYOB Sync

$18-$49 / Month

7.7

11 Reviews

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Auto-Sync & Reconcile for Sales, Fees, Refunds, COGS & More Show more

Xero, QuickBooks or MYOB Sync by Amaka is a powerful integration tool that streamlines your ecommerce accounting process by syncing your Shopify order data into Xero, QuickBooks Online (QBO), or MYOB on a daily basis. It efficiently maps all transactions including sales, COGS, refunds, fees, gift cards, taxes, and payment types to their relevant accounts, eliminating the hassle of manual data entry. With a capability to match transactions automatically to Shopify payouts, this tool speeds up bank reconciliation, making it almost instantaneous. Users have the flexibility to opt for individual transactions or summarised daily invoices, and the app provides options to back sync up to 12 months of historical data. To ensure an easy onboarding experience, Amaka offers a quick 2-minute setup along with advanced and guided installation options. Furthermore, support is readily available through unlimited 1:1 video calls, live chat, and a dedicated helpdesk, offering peace of mind with reliable customer assistance.

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Fee tracking

Auto-sync orders

Sales mapping

Refund handling

Cogs mapping

Gift card mapping

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Bokio

Import your sales and automatically bookkeep with Bokio Show more

Bokio is a comprehensive app designed to seamlessly connect your Shopify store with the Bokio accounting service, simplifying the accounting process for businesses. With automatic importation of new Shopify orders, Bokio streamlines daily sales recording by providing ready-made accounting suggestions tailored to your transactions. The app facilitates effortless payout recording through user-friendly templates, ensuring smooth and accurate financial management. Bokio supports both domestic and international sales, accommodating multiple currencies to meet the diverse needs of businesses. Users are guided through the integration process step by step, allowing for a quick and easy setup. As a result, orders and returns sync automatically every day, while VAT calculations and accounting proposals are handled with precision. Experience an all-in-one system that empowers you to manage your business finances efficiently and effectively.

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Multi-currency support

Automated import

Daily sales recording

Accounting templates

Vat calculation

Order & return syncing

UpCharge Fees Addons Surcharge

$9.99 / Month

9.1

149 Reviews

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Surcharges and order fees to increase your sales and AOV Show more

UpCharge: Surcharges & Fees is a versatile app designed to streamline the addition and management of fees within your shopping platform. It allows you to create an unlimited number of fees or surcharges, which can be applied either to specific products or the entire shopping cart. Users have the flexibility of designing fixed-amount fees or percentage-based fees, ensuring customization to suit different pricing strategies. The app also empowers users with the ability to set conditions that determine the visibility and applicability of these fees, providing clarity and control over fee implementation. Whether you're charging for rush delivery, special handling, insurance, gift wrapping, or any custom requests, UpCharge accommodates a wide array of fee types. The app supports diverse input methods, such as checkboxes, drop-downs, radio buttons, text entries, and more, enhancing user interaction and experience. This feature-rich tool is ideal for businesses seeking to optimize their pricing models through strategic surcharges.

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Conditional visibility

Unlimited fees

Attach to products

Percentage-based fees

Fixed-amount fees

Fee input types

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Canteen ‑ Deposits and Fees

$9.99 / Month

8.8

45 Reviews

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Charge mandatory fees for deposits, recycling or setup fees Show more

The Canteen app is an essential tool for merchants seeking a streamlined solution to effortlessly collect various business fees. Designed with convenience in mind, Canteen simplifies the collection of bottle deposits, environmental fees, setup fees, design fees, core charges, security deposits, and more. Featuring a versatile rule builder, users can easily create and customize fee rules, update thumbnails, adjust tax options, and define the frequency of fees—whether one-time, per cart, or per product quantity. The app seamlessly integrates fees into the cart and checkout process, supporting both ecommerce and POS systems. Additionally, merchants can generate detailed reports on collected fees to aid in accounting and financial management. Canteen is compatible with hundreds of Shopify themes, including 2.0 themes, ensuring broad usability across different platforms.

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Collects mandatory fees

Rule builder configuration

Automatic fee addition

Flexible fee settings

E-commerce and pos integration

Fee reporting for accounting

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Magical Fees & Surcharges

$9.99-$14.99 / Month

8.1

55 Reviews

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Add Required Fees to Products - Collect Surcharges & Deposits Show more

Magical Product Fees is a versatile app designed to simplify the process of adding and managing various types of fees to your products or entire orders. Whether you're running an online store or a physical retail space through POS, this app allows you to efficiently apply fees such as deposits, surcharges, service charges, eco fees, and more. With a user-friendly fee builder, you can create both fixed price and percentage-based fees, tailored to your business needs. The app comes equipped with flexible rules that give you control over when and how these fees are applied, ensuring a seamless integration into your sales process. Additionally, the app displays fees transparently on product pages, carts, and during checkout, enhancing customer interaction. Supported by a responsive customer service team, you can have the app up and running in just minutes, making fee management effortless and straightforward.

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Add required fees

Customize fee rules

Apply percentage fees

Attach fixed fees

Display on checkout

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Order Handling Fees

$10-$100 / Month

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Only app that supports taxable variable fees for POS (eg PIF) Show more

Order Handling Fees is a specialized app designed exclusively for POS systems, aimed at capturing additional fees like the Public Improvement Fee (PIF) that are levied by local governments. These fees, often applicable to point-of-sale transactions, can be easily configured as either fixed amounts or as a percentage of the total cart value. Once installed, users can add an intuitive tile to their POS handheld devices, facilitating quick access to these fee settings. Upon adding items to a cart, a simple press of the tile displays and applies the configured fees, seamlessly integrating them into the order total. Additionally, the app allows for the categorization of fees as taxable or non-taxable, providing flexibility for various jurisdictions. Users can also customize their reporting by naming or assigning SKUs to the fees being collected, ensuring comprehensive downstream financial tracking and compliance.

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Configurable fees

Taxable options

Pos tile integration

Fixed/variable fees

Custom fee naming

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FeeBee ‑ Fees and Deposits

$9.99 / Month

9.1

4 Reviews

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Füge Pfand, Gebühren und Zusatzkosten zu Produkten hinzu Show more

FeeBee - Gebühren und Pfand is a versatile app designed to streamline the addition of various product fees, such as deposits, taxes, flat rates, or additional insurances, directly to your products with just a few clicks. This app ensures that all fees are clearly itemized at checkout and within the order details, maintaining compliance with legal requirements. Thanks to Shopify Bundles, it prevents any possibilities for fees to be bypassed by customers. The app is compatible with all Shopify themes without the need for any custom adjustments, offering seamless integration. FeeBee also includes a dedicated German-speaking support team, ready to assist and ensure that you can efficiently set up and launch the app in just minutes. Moreover, it automatically displays fees on product pages, in the shopping cart, and during checkout, providing transparency for customers at every stage of their purchase.

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Checkout integration

Automatische gebühren

Pfand hinzufügen

Gebühren aufschlüsseln

Produktseiten gebühren

Alle themes unterstützt

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FlexiFees ‑ Conditional Fees

$3 / Month

9.1

1 Reviews

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Enhance your cart with flexible, automated fee management. Show more

FlexiFees ‑ Conditional Fees is a dynamic app designed to streamline the addition of extra mandatory fees to your online store's checkout process. It allows you to seamlessly attach fixed-amount or percentage-based fees to specific products or the entire shopping cart, ensuring every necessary charge is applied effortlessly. With customizable conditions, you gain full control over when and how these fees are applied, tailoring the experience to suit your business needs. The app operates smoothly in the background, utilizing webhooks to detect changes and automatically update the storefront cart when conditions are met. This ensures a seamless shopping experience for your customers, with fees being adjusted in real-time as products are added or changed. FlexiFees is the perfect solution for online businesses looking to manage additional fees with precision and ease.

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Product extra fees

Cart fees

Conditional fee applicability

Webhook fee addition

Automatic cart update

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QuickBooks Online

$30 / Month

(1.8/5)

51 Reviews

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Sync payouts to view summarized sales, refunds, and fees. Show more

QuickBooks Online is a powerful tool designed to streamline and automate your accounting by seamlessly integrating with your Shopify store. By connecting your Shopify account, you can effortlessly import Payouts and leverage up to 24 months of historical data, enhancing your financial insight and reporting capabilities. The app simplifies tracking by dividing payouts into sales receipts, refund receipts, and expenses for fees, minimizing manual data entry and saving you valuable time. QuickBooks Online ensures your payouts are automatically categorized, allowing you to easily analyze sales, shipping, discounts, and fees across your Profit & Loss statement or Balance Sheet. This precise categorization helps you maintain a clear understanding of your cash flow and revenue channels. With just a few easy steps, you can connect your Shopify account, stay organized, and focus more on growing your business rather than being bogged down by accounting tasks.

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Sync shopify data

Automate accounting

Track payouts

Split sales receipts

Categorize expenses

Historical data import

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COD King‑COD Fees & OTP Verify

$7.99-$39 / Month

9.3

654 Reviews

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Reduce fake COD orders by verifying phone numbers via OTP. Show more

COD King‑COD Fees & OTP Verify is a comprehensive app designed to streamline cash on delivery (COD) processes for merchants. The app enhances order verification by utilizing OTP or secure links via SMS and WhatsApp, significantly reducing the occurrence of fake orders and minimizing returns to origin (RTO), thereby cutting shipping costs. It offers flexibility in payment methods by allowing merchants to toggle the visibility of COD options based on specific criteria such as country, zip code, product, or cart value. Additionally, the app facilitates the imposition of extra fees for COD transactions, encouraging customers to opt for prepaid methods through strategic discounts. To further drive sales, it sends abandoned cart messages, urging potential buyers to complete their transactions. This feature-packed application is particularly beneficial in optimizing sales and ensuring the authenticity of COD orders, making it an indispensable tool for businesses reliant on COD.

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Otp order verification

Abandoned cart messaging

Cod fees adjustment

Cod visibility control

Prepaid conversion

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QuickBooks/Xero sync ‑ Synder

$65-$275 / Month

9.1

271 Reviews

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Sync your Sales, Fees and Inventory to QuickBooks or Xero Show more

Synder is a powerful app designed to automate the synchronization of Shopify sales data, including items, fees, taxes, discounts, gift cards, and shipping details, with accounting platforms like Xero, Sage Intacct, and QuickBooks Online or Desktop. It streamlines reconciliation processes, supports historical data imports, and facilitates multi-currency transactions, offering a comprehensive bookkeeping solution. Users can connect all their sales channels with Synder in under 15 minutes, making it a time-efficient choice for busy Shopify merchants and accountants. The app allows for flexible syncing options, enabling daily summarized entries or individual sales to be recorded based on user preferences. With robust functionality that supports over 25 platforms, Synder ensures seamless integration, helping businesses maintain accurate financial records with minimal effort. Trusted by professionals, it simplifies the often complex accounting process, making it an ideal tool for managing Shopify store finances efficiently.

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Multi-currency support

Auto-sync shopify

Daily summarized entries

Import historical transactions

Inventory/cogs sync

Supports 25+ platforms

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Shopify Fees apps

Related Categories

Price

Based on reviews

Showing 1 to 20 of 11 Apps

Webgility x QuickBooks Desktop

Zonos Duty and Tax

Taxomate QuickBooks Xero Sync

HideShip:Hide Shipping Methods

Klavena: QuickBooks Sync

Pfand ‑ Deposit & Cart Fee

Storebuddy

FreeAgent

Airboxr: AI Sales Metrics

Xero, QuickBooks or MYOB Sync

Bokio

UpCharge Fees Addons Surcharge

Canteen ‑ Deposits and Fees

Magical Fees & Surcharges

Order Handling Fees

FeeBee ‑ Fees and Deposits

FlexiFees ‑ Conditional Fees

QuickBooks Online

COD King‑COD Fees & OTP Verify

QuickBooks/Xero sync ‑ Synder